This is the continuation of the Phantom Program that was first introduced in Battlefield 4.

Phantom Prospect Tag & Split the Difference Charm

Haven

Radio Message
Hannah: Time to tell you who I really am. You've trusted me as a voice in the shadows, some warrior spirit trying to shepherd the soon to be dead. Because I'm the one who should be dead. I'm Hannah, Hannah Shuyi. The Phantom Program saved me but we need you if we're going to save everybody else. The time to move against Blackburn is now. That information we recovered from the Boreas facility; time for it to go public. Everyone needs to know what Blackburn has done to the No-Pats and I can't think of anyone better to shine a light on the truth.

Portal code: ABZC8J

Equip 1.25x thermal.
Check in at the radio, you will get the "Split the Difference" charm.
Redeploy and equip the charm.
Go to the paper location and check which paper you got.
Input the sequence derived from the paper at the condor.
There should be a hissing sound and the flames will pull back. Open the crate that are in the cockpit to get the "Phantom Prospect" Tag.

Haven Map
Split the Difference Charm
Phantom Prospect

Revival Playercard

Stranded

Radio Message 1
Hannah: It's all fucking connected. Arkangel's fingerprints are showing up everywhere. The Ascension Network, Boreas, the Geists, it's all connected. Blackburn jumping ship to the TPC says volumes. We have him on the run and he's scrambling for Control. We have to stop him before the balance tips his way.
Radio Message 2
Blackburn: Hello No-Pats. I seem to be the talk of the town lately. I thought after my deal with Irish we would have come to an understanding but, not with that little bird in your ear.
Playercard
You found it. The Boreas hard drive. This was where our journey started. Do you remember? Missing No-Pats. Blackburn. His Dark Creations Will End Us All. It feels like a lifetime ago. Back then I had no voice. I spoke only through codes. Did you ever decrypt them all? You completed my trial. Became the Revenant. The first step to joining The Program. But we're still here. You and me. We held on. Endured some hard times. Now it's time to continue our work.

Portal code: ABZC8R

Equip the "Phantom Prospect" Tag, the AN-94 and McKay,
Check in at the radio.
Follow each route, redeploy after each route.
Open the white container and get the data drive and the "Revival" playercard.

Revival Card
Stranded Map

"Severed Loyalities" Charm & "Return" Playercard

Kaleidoscope

Radio Message 1
Blackburn: Think about this. How many soldiers have died in this war already. How many new will bleed when you leak that intel. You claim my methods are extreme, but shouldn't the needs of the many outweigh the needs of the few? Honor their sacrifice No-Pats, don't waste it.
Radio Message 2
Blackburn: sigh Stubborn and shortsighted aren't ya? That way of thinking fucked me over a long time ago, your contextless data won't make a difference. You can't stop what's in motion No-Pats. No one can.
Radio Message 3
Hannah: You don't know how much of a difference you made. One little ripple spreads across a nation and becomes a wave covering the whole world. But there is a new storm coming. Let's get ready.
Playercard
In a way, you've been here before. Soldiers on battlefields throughout history. Hidden rooms. Secret tunnels. A Peacekeeper. An Operative. You've been on the hunt. Following clues. Decrypting codes. In search of something greater. Something only a few can achieve. You'll face adversity. Frustration. Hardship. You'll lose yourself and won't know where to turn. But that's where your allies come in. Together you'll put the pieces together and crack it. Solve it. Beat it. Just as you have before. I know you will.

Portal code: ABZC8S

Check in the data drive at the reception.
Enter 3723061263842 at servers (See the picture),
Confirm at laptop,
QUICKLY identify which server goes red (check both sides!), press a button to fix it , repeat until no more errors.
Interact with the laptop

Kaleidoscope Map
Return Card
Severed Loyalties Charm

Phantom Trainee Tag

Secret mission

Deal 1,000 damage with Grappling Hook as MacKay.
In one round, destroy 20 projectiles with Trophy System on an objective as Irish.
Destroy 5 vehicles with G-84 TGM while parachuting as Lis.
Scan 30 enemies with EMG-X Scanner without dying as Paik.

Phantom Trainee

Regent Playercard

Stadium

Radio Message
. -. - . .-. / -... .-.. .- -.-. -.- -... ..- .-. -. ... / - .... .-. . . / .--. .- ... ... -.-. --- -.. . ... .-.-.- / --. --- / -... . -.-- --- -. -.. Which translates to: ENTER BLACKBURNS THREE PASSCODES. GO BEYOND
Playercard
This wasn't how the world was supposed to be. Hannah felt it every time she looked at changing allegiances on a map and changing clouds in the sky, both spun out of machines - constant, purposeful interference. She had every conceivable resource in her hands, agents on every major battlefield, and yet... Where would it end? When would the Program fall into hibernation again, waiting for the next tide of war to swell? She couldn't even begin to guess.

Portal code: AB1MNC

Interact with the radio.
Radio plays morse, translating to ENTER BLACKBURNS THREE PASSCODES. GO BEYOND,
Input sequence 264135 at Stadium buttons, this unlocks the Regent Playercard

Regent Card
Stadium Map

"Heavy Is The Crown" Charm

Spearhead

Radio Message
Blackburn: Your associate may paint me as a pariah, but her facts are twisted. Not the whole story. I saved New York goddamn City from becoming a crater and what was my thanks? Dishonourable discharge, cast out, abandoned, the same way they did for countless no-pats. They took everything from me. So I did what I had to, to survive. Surely you know what that’s like no-pats of Exodus. We have a lot more in common than you might think.

Portal code: AB1MK7

A box on Spearhead (hackable with Rao) containing a paper with the word MISFIT
There is a radio and buttons on Spearhead.

Solution:

Interact with the radio
Input sequence 4 2 1 6 1 5 1 1 2 2 1 2 1 3 1 5 4 2 2 5 2 1 2 4 1 2 at the buttons

Spearhead Map
Heavy is the crown Charm

"Dead Reckoning" Weapon skin & "Phantom Initiate" Player tag

Exposure

Portal code: AB1MK2

Solution:

Interact with the radio
Input sequence 3 2 3 4 3 3 3 6 4 5 4 3 2 5 5 1 3 1 2 1 2 3 3 2 3 6 at the buttons

Exposure Map
Dead Reckoning weapon skin
Phantom Initiate tag

"Beyond The Veil" Charm

Reclaimed

Portal code: AB3AEU

Solution:

Interact with the radio
Get the Phantom Device
Put down Blasco device near the buttons
Input sequence 6 2 1 4 5 6 3 3 1 6 2 5 1 2 4 at the buttons
Open the Phantom device
Wait

Reclaimed Map
Beyond The Veil Charm

"Crown Slayer" Weapon skin & Katabasis player card

Redacted

Portal code: ABK44S

Solution:

Interact with the radio and listen to the full transmission
Pick up the Phantom device
Go up top on the highest building at B1
You might have to destroy the trees.
Shot the dome according to the images. The tiles will light upp blue.
Respawn as Rao on A1
Hack the "Forge"
Respawn at B1 with Blasco and pickup the Phantom device again.
Head back to the forge and place Blascos device next to it.
Equip the Phantom device and upload the virus.
Respawn at A1 as Falck
Interact with the forge.
Guide the Geist to its destination, while healing it with the dart gun and medic packs. But dont enter the elevator with it.
Listen to the final transmission to get the rewards.

Redacted map
Dome 1
Dome 2
Dome 3
Dome 4
Dome 5
Dome 6
Dome 7
Dome 8
Dome 9
Dome 10
Crown Slayer weapon skin
Katabasis player card

"Skull Scraper" Pondhawk skin & "Phantom Operative" Player tag

Breakaway

Portal code: AB3AYD

Go to radio
Go to terminal and input 2 2 3 3 3 5 5 4 6 6 6
Go to The buttons, one set of numbers will work 2314 / 1432 / 3142
Get the Phantom device
Upload virus to all the antenna tips
Go to radio again

Breakaway map

Get the Pegasus Challenges

Iwo Jima

Portal code: AB3A7B

Go to the panel enter the codes, one digit at a time:
250146
613251
515176
441806

All the lights should be green.

Go to the door.

Ride the elevator down. This needs 4 people each with a different Tag from the Phantom Program. (Unsure if staying prone works, investigation is under way on which way doesnt kill you.)

In the room interact with the buttons to get the challenges.

Bottom left button
HOLD THE CRASHSITE FOR A COUNT OF 300. YOU CANNOT FALL. HOLD THE CENTER OF TOWN FOR A COUNT OF 300. YOU CANNOT FALL. HOLD THE LAST OASIS FOR A COUNT OF 300. YOU CANNOT FALL.
Top left button
SO BEGINS YOUR WATCH. AID TEN OF YOUR FELLOWS WHERE WEAPONS ARE HIDDEN. STAY CLOSE. YOU CANNOT FALL AID TEN OF YOUR FELLOWS IN THE NORTHERN COMAND. STAY CLOSE. YOU CANNOT FALL. AID TEN OF YOUR FELLOWS IN THE SOUTHERN COMAND. STAY CLOSE. YOU CANNOT FALL AID TEN OF YOUR FELLOWS AT THE LETTER OF DEATH. STAY CLOSE. YOU CANNOT FALL AID TEN OF YOUR FELLOWS WHERE NATURE HAS COLLAPSED. STAY CLOSE. YOU CANNOT FALL
Top right button
IN ONE LONG BREATH, YOU MUST ACT. WALK ON YOUR OWN TWO FEET TO STAKE A CLAIM THE BASE IN THE WEST. WALK ON YOUR OWN TWO FEET TO STAKE A CLAIM WHERE SIGNALS CUT THROUGH THE SKY. WALK ON YOUR OWN TWO FEET TO STAKE A CLAIM IN THE CENTER WHERE TECHNOLOGY MEETS NATURE. CLAIM TEN SOULS, WHEREVER YOU CAN FIND THEM
Bottom right button
THE NORTHERN OPERATION DEMANDS CLAIM TWENTY SOULS SHROUDED IN SMOKE AND REVEALED BY YOUR KEEN EYE THE SOUTHERN OPERATION DEMANDS YOU REVEAL THIRTY SOULS AND CLAIM FIFTEEN OF THEIR HEADS FROM AN EAGLE'S DISTANCE. STAY INVISIBLE INSIDE THE PORT UNTIL YOU HAVE CLAIMED FIFTEEN SOULS, THREE OF WHICH MUST BE WITH YOUR BARE HANDS.

Iwo Jima map

Pegasus Challenges

These challenges will unlock phantom skins for each class.

Exposure

Support class
Portal code: AB1MK2
You can damage yourself with grenades/Explosive crossbow bolts etc.
You can die between flags.
Capture of the point is not necessary.
If you heal yourself, shoot dart at floor/ground and walk over it.

Steps:

Heal yourself or a team-mate 10 times at A1 without dying.
Heal yourself or a team-mate 10 times at B1 without dying.
Heal yourself or a team-mate 10 times at B2 without dying.
Heal yourself or a team-mate 10 times at D1 without dying.
Heal yourself or a team-mate 10 times at C1 without dying.
Get into a vehicle

Spearhead

Assault class
Portal code: AB1MK7
You cannot die.
You must remain on foot

Steps:

Capture A1
Capture A2
Capture B1
Capture C1
Capture C2
Kill 10 enemies before capturing D1
Capture D1

Haven

Engineer class
Portal code: AB55HP
Requires Team-mate/bots in enemy team.

Steps:

Capture and hold B1 for 5 minutes (while it is being contested)
Capture and hold C1 for 5 minutes (while it is being contested)
Capture and hold D1 for 5 minutes (while it is being contested)
Get 20 kills/assists with any vehicle without dying and while staying inside A1.

Manifest

Recon class
Portal code: AB55H9

*Under investigation*